Job-shop-productions are facing high requirements due to the high diversity of manufactured products, changing lot-sizes and strongly cross-linked material flows. This situation is intensified by dynamic effects which are caused by non-linear dependences between the system’s parameters. The complex dynamics can affect the logistic performance of the system by varying stock-levels, rising cycle times or decreasing capacity utilisation. This paper describes an approach to analyse the effects of the factory planning process on the system’s dynamics, whereat the focus will be on the planning subtasks of dimensioning and structuring. This is expected to improve methods of design for job-shop-productions.